Join me at the Festival of Genomics San Diego June 26-27 where I’ll be speaking in a panel on “Overcoming bottlenecks in using the microbiome to improve health.” The festival combines powerful learning experiences and brings together representatives from all areas of genomic medicine to explore health care and clinical applications, technological advances in CRISPR and single cell analysis and pharma R&D to enable precision medicine. Check out the full agenda here: agenda
Two articles were accepted and soon to be in press! Keep a eye out for:
- Sastry et al. Bioinformatics (2017) — my first senior author paper!
- Monk, Lloyd, Brunk et al. Nature Biotechnology (2017)
Looking forward to giving a talk in the Gene Variation 3D workshop – held at the Institute for Systems Biology in Seattle! Working toward the interconnection of genomic, proteomic, and protein structure data…
Our publication was the most cited in 2016! BMC Systems Biology
Check out the fruit of our collaboration with RCSB PDB (Protein Data Bank) – you can now map & visualize 3D protein structures in the context of their biochemical pathways! A first for PDB!
Cell Systems article is finally out! Check out the nice preview article commentary the journal wrote on our manuscript! preview commentary link
Check out my new blog for anyone interested in writing a K99/R00 application: K99 tips!
- I’m especially grateful to have joined everyone in Cairns, Australia for the computational chemical biology series!
- Our Review Article in Chemical Reviews is finally out!
Mixed Quantum Mechanical/Molecular Mechanical Molecular Dynamics Simulations of Biological Systems in Ground and Electronically Excited States.
E. Brunk and U. Rothlisberger
Other useful links
Biomimicry and Synthetic Biology:
- Michael Pawlyn: Using nature’s genius in architecture | Talk (Ted Talk)
- Watch Jay Keasling Speak on Synthetic Biology (Nova PBS documentary)
- Jay Keasling on Colbert Report
Systems Biology and genome scale modeling:
- BiGG database
- Escher: a tool to create genome-scale maps of metabolic networks
- Cobrapy: Python-based genome scale modeling program
General computational tools of interest